GSVIVT01016874001


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a chloroplast RNA editing factor. ORGANELLE TRANSCRIPT PROCESSING 82 (OTP82)


Gene families : OG_01_0006634 (Gene family) Phylogenetic Tree(s): OG0006634_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01016874001
Cluster HCCA cluster: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
AT1G32415 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Gene family
LOC_Os05g24150 Os05g0307200 No description available 0.03 Gene family
MA_10430355g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc07g009220.2.1 Solyc07g009220.2 No description available 0.06 Gene family
Zm00001d022394 GRMZM2G326263 No description available 0.07 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 393 440
IPR002885 Pentatricopeptide_repeat 189 238
IPR002885 Pentatricopeptide_repeat 293 340
IPR002885 Pentatricopeptide_repeat 160 187
IPR002885 Pentatricopeptide_repeat 469 492
IPR002885 Pentatricopeptide_repeat 59 87
IPR002885 Pentatricopeptide_repeat 267 287
IPR002885 Pentatricopeptide_repeat 368 389
IPR002885 Pentatricopeptide_repeat 130 154
No external refs found!