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  5. GSVIVT01015233001

GSVIVT01015233001


Description : No description available


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01015233001
Cluster HCCA cluster: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Gene family
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.08 Gene family
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Gene family
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT5G19020 MEF18 mitochondrial editing factor 18 0.04 Gene family
Cpa|evm.model.tig00021435.54 No alias No description available 0.02 Gene family
GSVIVT01009789001 No alias No description available 0.03 Gene family
GSVIVT01033190001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os01g72930 Os01g0959600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os03g04390 Os03g0136700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os04g39410 Os04g0469400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os05g30710 Os05g0370000 No description available 0.02 Gene family
LOC_Os05g50950 Os05g0586900 No description available 0.03 Gene family
LOC_Os06g30940 Os06g0506100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os07g20420 Os07g0299800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_100287g0010 No alias No description available 0.02 Gene family
MA_109221g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_11074g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_519985g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_9526611g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo47998 PACid_15423210 No description available 0.03 Gene family
Smo89230 PACid_15407693 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo90123 PACid_15410274 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo98955 PACid_15417483 No description available 0.02 Gene family
Solyc01g006920.3.1 Solyc01g006920.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.02 Gene family
Solyc01g100800.2.1 Solyc01g100800.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc02g088650.1.1 Solyc02g088650.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc03g063160.1.1 Solyc03g063160.1 No description available 0.05 Gene family
Solyc03g093630.2.1 Solyc03g093630.2 No description available 0.02 Gene family
Solyc03g116000.1.1 Solyc03g116000.1 No description available 0.03 Gene family
Solyc04g064750.2.1 Solyc04g064750.2 No description available 0.05 Gene family
Solyc04g076330.2.1 Solyc04g076330.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc05g012630.1.1 Solyc05g012630.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc06g066080.1.1 Solyc06g066080.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.05 Gene family
Solyc07g008480.2.1 Solyc07g008480.2 No description available 0.03 Gene family
Solyc07g053520.2.1 Solyc07g053520.2 No description available 0.04 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc08g023640.1.1 Solyc08g023640.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc08g078570.2.1 Solyc08g078570.2 No description available 0.03 Gene family
Solyc09g007040.1.1 Solyc09g007040.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc09g009790.3.1 Solyc09g009790.3 No description available 0.02 Gene family
Solyc09g010070.1.1 Solyc09g010070.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc11g005960.1.1 Solyc11g005960.1 No description available 0.06 Gene family
Solyc11g007230.1.1 Solyc11g007230.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc11g067210.1.1 Solyc11g067210.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.02 Gene family
Zm00001d003786 GRMZM2G153275 No description available 0.03 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.03 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d025870 GRMZM5G827485 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d028422 GRMZM2G019689 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d035922 GRMZM2G102938,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d037891 No alias No description available 0.03 Gene family
Zm00001d039193 GRMZM2G440349 No description available 0.04 Gene family
Zm00001d039873 GRMZM2G380195 No description available 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 630 754
IPR002885 Pentatricopeptide_repeat 27 50
IPR002885 Pentatricopeptide_repeat 532 556
IPR002885 Pentatricopeptide_repeat 431 455
IPR002885 Pentatricopeptide_repeat 184 237
IPR002885 Pentatricopeptide_repeat 256 302
IPR002885 Pentatricopeptide_repeat 356 403
IPR002885 Pentatricopeptide_repeat 457 504
No external refs found!