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  5. Ehy_g23134

Ehy_g23134 (LINC2)


Aliases : LINC2

Description : nuclear lamina lamin-like protein *(CRWN) & original description: none


Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g23134

Target Alias Description ECC score Gene Family Method Actions
AT1G68790 LINC3 little nuclei3 0.03 OrthoFinder output from all 47 species
AT5G65780 ATBCAT-5 branched-chain amino acid aminotransferase 5 /... 0.03 OrthoFinder output from all 47 species
Aev_g06792 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Ala_g08422 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene48756.t1 LINC2, Aspi01Gene48756 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Ceric.31G070800.1 LINC2, Ceric.31G070800 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Msp_g26620 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g14315 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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  • Type GO Term Name Evidence Source
    MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
    MF GO:0004357 glutamate-cysteine ligase activity IEP HCCA
    BP GO:0006351 DNA-templated transcription IEP HCCA
    BP GO:0006553 lysine metabolic process IEP HCCA
    BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
    BP GO:0006807 nitrogen compound metabolic process IEP HCCA
    MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
    BP GO:0008152 metabolic process IEP HCCA
    BP GO:0008652 amino acid biosynthetic process IEP HCCA
    MF GO:0008837 diaminopimelate epimerase activity IEP HCCA
    BP GO:0009058 biosynthetic process IEP HCCA
    BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
    BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
    BP GO:0009085 lysine biosynthetic process IEP HCCA
    BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
    MF GO:0016779 nucleotidyltransferase activity IEP HCCA
    MF GO:0016854 racemase and epimerase activity IEP HCCA
    MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
    MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
    MF GO:0016881 acid-amino acid ligase activity IEP HCCA
    CC GO:0030684 preribosome IEP HCCA
    CC GO:0032040 small-subunit processome IEP HCCA
    BP GO:0032774 RNA biosynthetic process IEP HCCA
    MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
    MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
    BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
    BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
    BP GO:0044237 cellular metabolic process IEP HCCA
    BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
    BP GO:0046451 diaminopimelate metabolic process IEP HCCA
    MF GO:0047661 amino-acid racemase activity IEP HCCA
    BP GO:0071704 organic substance metabolic process IEP HCCA
    BP GO:0097659 nucleic acid-templated transcription IEP HCCA
    MF GO:0097747 RNA polymerase activity IEP HCCA
    MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
    MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
    MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
    BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
    BP GO:1901576 organic substance biosynthetic process IEP HCCA
    BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
    BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
    CC GO:1990904 ribonucleoprotein complex IEP HCCA

    No InterPro domains available for this sequence

    No external refs found!