GSVIVT01013800001


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0001610 (Gene family) Phylogenetic Tree(s): OG0001610_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01013800001
Cluster HCCA cluster: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01032447001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
LOC_Os05g50260 Os05g0578600 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc05g005040.3.1 Solyc05g005040.3 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
Solyc05g005170.3.1 Solyc05g005170.3 10.6.3 cell wall.degradation.pectate lyases and... 0.01 Gene family
Zm00001d011156 GRMZM2G338158 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 114 430
No external refs found!