AMTR_s00197p00028970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00197.10

Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG_01_0000174 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000174_tree ,
OG_02_0000204 (LandPlants) Phylogenetic Tree(s): OG_02_0000204_tree ,
OG_03_0000166 (SeedPlants) Phylogenetic Tree(s): OG_03_0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00197p00028970
Cluster HCCA: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001085.4 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Gb_25326 No alias histone (H2A) 0.03 Archaeplastida
MA_10425800g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_9379473g0010 No alias histone (H2A) 0.02 Archaeplastida
Pp3c3_30120V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.09 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Zm00001e005512_P001 No alias histone (H2A) 0.04 Archaeplastida
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.02 LandPlants
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.04 LandPlants
Gb_07070 No alias histone (H2A) 0.02 LandPlants
Gb_25326 No alias histone (H2A) 0.03 LandPlants
MA_10425800g0010 No alias histone (H2A) 0.03 LandPlants
MA_7320190g0010 No alias histone (H2A) 0.02 LandPlants
Pp3c10_13610V3.1 No alias gamma histone variant H2AX 0.02 LandPlants
Pp3c3_30120V3.1 No alias Histone superfamily protein 0.04 LandPlants
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.04 LandPlants
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.09 LandPlants
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.04 LandPlants
Zm00001e005512_P001 No alias histone (H2A) 0.04 LandPlants
Zm00001e010516_P001 No alias histone (H2A) 0.02 LandPlants
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.02 SeedPlants
MA_10425800g0010 No alias histone (H2A) 0.03 SeedPlants
Zm00001e005512_P001 No alias histone (H2A) 0.04 SeedPlants
Zm00001e010516_P001 No alias histone (H2A) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 23 96
No external refs found!