Ehy_g21276 (NAF1, ATNAF1)

Aliases : NAF1, ATNAF1

Description : non-core component *(NAF1) of H/ACA snoRNP RNA pseudouridylation complex & original description: none

Gene families : OG0004285 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004285_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ehy_g21276

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00263450	NAF1, ATNAF1,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	OrthoFinder output from all 47 species
Ala_g25470	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
Als_g21824	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.05	OrthoFinder output from all 47 species
Azfi_s0185.g056625	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
Cba_g23307	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.04	OrthoFinder output from all 47 species
Ceric.04G032200.1	NAF1, ATNAF1,...	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
Ceric.14G085100.1	NAF1, ATNAF1,...	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.04	OrthoFinder output from all 47 species
Cre10.g467100	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	OrthoFinder output from all 47 species
Dcu_g41888	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
GSVIVT01030569001	NAF1, ATNAF1	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	OrthoFinder output from all 47 species
MA_10092337g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Msp_g36447	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
Ppi_g57108	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
Zm00001e032062_P001	NAF1, ATNAF1,...	non-core component Nhp2/Naf1 of H/ACA small nucleolar...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004417	hydroxyethylthiazole kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006772	thiamine metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009228	thiamine biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034308	primary alcohol metabolic process	IEP	HCCA
BP	GO:0034309	primary alcohol biosynthetic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
CC	GO:0070652	HAUS complex	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007504	H/ACA_rnp_Gar1/Naf1	294	378

External Links

No external refs found!

Ehy_g21276 (NAF1, ATNAF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation