GSVIVT01011333001


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a chloroplast RNA editing factor. ORGANELLE TRANSCRIPT PROCESSING 82 (OTP82)


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01011333001
Cluster HCCA cluster: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
LOC_Os01g41650 Os01g0600400 No description available 0.03 Gene family
LOC_Os01g62910 Os01g0848300 No description available 0.06 Gene family
LOC_Os02g53050 Os02g0769900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os03g04390 Os03g0136700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os04g02850 Os04g0118700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os04g39410 Os04g0469400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
LOC_Os05g50950 Os05g0586900 No description available 0.07 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os12g30620 Os12g0490100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
MA_100287g0010 No alias No description available 0.03 Gene family
MA_116829g0010 No alias No description available 0.02 Gene family
MA_123466g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_20622g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_210823g0010 No alias No description available 0.02 Gene family
MA_230261g0010 No alias No description available 0.02 Gene family
MA_38266g0010 No alias No description available 0.03 Gene family
MA_442926g0010 No alias No description available 0.02 Gene family
MA_4438g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_73895g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_8210920g0010 No alias No description available 0.02 Gene family
MA_86628g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_8868720g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_94165g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_961981g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo105356 PACid_15414251 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo106861 PACid_15420913 No description available 0.02 Gene family
Solyc01g095690.2.1 Solyc01g095690.2 No description available 0.03 Gene family
Solyc02g081900.3.1 Solyc02g081900.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc03g025700.1.1 Solyc03g025700.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d031535 GRMZM2G076257 No description available 0.06 Gene family
Zm00001d039873 GRMZM2G380195 No description available 0.04 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 102 151
IPR002885 Pentatricopeptide_repeat 370 418
IPR002885 Pentatricopeptide_repeat 269 317
IPR002885 Pentatricopeptide_repeat 207 229
IPR002885 Pentatricopeptide_repeat 445 469
IPR002885 Pentatricopeptide_repeat 512 539
No external refs found!