AMTR_s00190p00017930 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00190.3

Description : Cell cycle.regulation.cyclins.CYCD-type cyclin


Gene families : OG_01_0000252 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000252_tree ,
OG_02_0000382 (LandPlants) Phylogenetic Tree(s): OG_02_0000382_tree ,
OG_03_0000715 (SeedPlants) Phylogenetic Tree(s): OG_03_0000715_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00190p00017930
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.06 Archaeplastida
AT3G50070 CYCD3;3 CYCLIN D3;3 0.04 Archaeplastida
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.05 Archaeplastida
AT4G37630 CYCD5;1 cyclin d5;1 0.04 Archaeplastida
AT5G67260 CYCD3;2 CYCLIN D3;2 0.07 Archaeplastida
GSVIVT01000451001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
GSVIVT01003175001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.06 Archaeplastida
GSVIVT01003610001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
GSVIVT01003674001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
GSVIVT01009432001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
GSVIVT01034128001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 Archaeplastida
Gb_03361 No alias cyclin (CYCD) 0.03 Archaeplastida
Gb_13023 No alias cyclin (CYCD) 0.03 Archaeplastida
Gb_37608 No alias cyclin (CYCD) 0.04 Archaeplastida
LOC_Os03g10650.1 No alias cyclin (CYCD) 0.02 Archaeplastida
LOC_Os03g42070.1 No alias cyclin (CYCD) 0.05 Archaeplastida
LOC_Os07g37010.1 No alias cyclin (CYCD) 0.04 Archaeplastida
LOC_Os09g02360.1 No alias cyclin (CYCD) 0.04 Archaeplastida
LOC_Os09g21450.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os12g39830.1 No alias cyclin (CYCD) 0.02 Archaeplastida
MA_10429174g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10429174g0030 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_10436212g0010 No alias cyclin (CYCD) 0.04 Archaeplastida
MA_114375g0010 No alias cyclin (CYCD) 0.06 Archaeplastida
MA_559426g0020 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_93221g0010 No alias cyclin (CYCD) 0.04 Archaeplastida
Mp8g17230.1 No alias cyclin (CYCD) 0.07 Archaeplastida
Smo15078 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 Archaeplastida
Smo412774 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 Archaeplastida
Solyc02g079370.3.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Solyc04g078470.3.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Solyc05g006050.3.1 No alias cyclin (CYCD) 0.02 Archaeplastida
Solyc07g054950.2.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e000749_P002 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e003084_P002 No alias cyclin (CYCD) 0.02 Archaeplastida
Zm00001e009441_P003 No alias cyclin (CYCD) 0.04 Archaeplastida
Zm00001e009982_P002 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e018000_P001 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e033498_P001 No alias cyclin (CYCD) 0.04 Archaeplastida
Zm00001e034405_P005 No alias cyclin (CYCD) 0.07 Archaeplastida
Zm00001e035575_P002 No alias cyclin (CYCD) 0.02 Archaeplastida
Zm00001e038767_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.04 LandPlants
GSVIVT01003610001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 LandPlants
Gb_03361 No alias cyclin (CYCD) 0.03 LandPlants
Gb_13023 No alias cyclin (CYCD) 0.03 LandPlants
Gb_37608 No alias cyclin (CYCD) 0.03 LandPlants
MA_10429174g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_10429174g0030 No alias cyclin (CYCD) 0.02 LandPlants
MA_10436212g0010 No alias cyclin (CYCD) 0.02 LandPlants
MA_114375g0010 No alias cyclin (CYCD) 0.03 LandPlants
MA_559426g0020 No alias cyclin (CYCD) 0.02 LandPlants
MA_93221g0010 No alias cyclin (CYCD) 0.02 LandPlants
Mp8g17230.1 No alias cyclin (CYCD) 0.04 LandPlants
Smo15078 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.02 LandPlants
Solyc05g006050.3.1 No alias cyclin (CYCD) 0.02 LandPlants
Zm00001e034405_P005 No alias cyclin (CYCD) 0.04 LandPlants
Zm00001e035575_P002 No alias cyclin (CYCD) 0.02 LandPlants
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.03 SeedPlants
GSVIVT01003610001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.04 SeedPlants
Gb_37608 No alias cyclin (CYCD) 0.02 SeedPlants
MA_10436212g0010 No alias cyclin (CYCD) 0.02 SeedPlants
MA_93221g0010 No alias cyclin (CYCD) 0.02 SeedPlants
Solyc05g006050.3.1 No alias cyclin (CYCD) 0.02 SeedPlants
Zm00001e034029_P002 No alias cyclin (CYCD) 0.01 SeedPlants

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006671 Cyclin_N 27 158
IPR004367 Cyclin_C-dom 160 252
No external refs found!