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  5. Ehy_g19796

Ehy_g19796 (ATRDRP1, RDR1)


Aliases : ATRDRP1, RDR1

Description : not classified & original description: none


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g19796

Target Alias Description ECC score Gene Family Method Actions
Aop_g01841 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14760 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.19G025000.1 ATRDRP1, RDR1,... not classified & original description: pacid=50576328... 0.02 OrthoFinder output from all 47 species
Dcu_g42400 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07935 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g39160.1 SMD1, RDR2,... ssRNA polymerase (RDR2) 0.02 OrthoFinder output from all 47 species
MA_467439g0010 SMD1, RDR2 RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g17422 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08538 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015753_P001 ATRDRP1, RDR1,... RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 404 990
No external refs found!