GSVIVT01009407001


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01009407001
Cluster HCCA cluster: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Gene family
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT5G13230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
GSVIVT01020016001 No alias No description available 0.03 Gene family
LOC_Os01g62910 Os01g0848300 No description available 0.02 Gene family
LOC_Os03g04390 Os03g0136700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os03g63560 Os03g0852700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os04g02850 Os04g0118700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os04g35650 Os04g0436800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os04g39410 Os04g0469400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os05g50950 Os05g0586900 No description available 0.03 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os12g30620 Os12g0490100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_100287g0010 No alias No description available 0.02 Gene family
MA_101084g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_11454g0010 No alias No description available 0.02 Gene family
MA_116829g0010 No alias No description available 0.02 Gene family
MA_123466g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_16823g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_185098g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_20622g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_38266g0010 No alias No description available 0.03 Gene family
MA_43615g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_442926g0010 No alias No description available 0.03 Gene family
MA_4438g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_525914g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_653417g0010 No alias No description available 0.04 Gene family
MA_75133g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_8210920g0010 No alias No description available 0.02 Gene family
MA_82595g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_86628g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_8868720g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_9258g0010 No alias No description available 0.02 Gene family
MA_953793g0020 No alias No description available 0.02 Gene family
Smo10002 PACid_15418807 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo105356 PACid_15414251 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo90123 PACid_15410274 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc01g007850.2.1 Solyc01g007850.2 No description available 0.03 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.02 Gene family
Solyc03g007840.1.1 Solyc03g007840.1 35.1.27 not assigned.no ontology.tetratricopeptide... 0.05 Gene family
Solyc03g025700.1.1 Solyc03g025700.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.04 Gene family
Solyc03g111210.3.1 Solyc03g111210.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc09g010070.1.1 Solyc09g010070.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc11g008940.1.1 Solyc11g008940.1 No description available 0.05 Gene family
Solyc11g010220.2.1 Solyc11g010220.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc11g066920.1.1 Solyc11g066920.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Solyc11g071370.1.1 Solyc11g071370.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc12g006575.1.1 Solyc12g006575.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Zm00001d020825 GRMZM5G851929 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d025695 GRMZM2G481373 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.09 Gene family
Zm00001d031535 GRMZM2G076257 No description available 0.04 Gene family
Zm00001d032185 GRMZM2G161368 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d037036 GRMZM2G129783 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d039193 GRMZM2G440349 No description available 0.04 Gene family
Zm00001d039873 GRMZM2G380195 No description available 0.08 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 682 702
IPR002885 Pentatricopeptide_repeat 192 220
IPR002885 Pentatricopeptide_repeat 262 289
IPR002885 Pentatricopeptide_repeat 366 391
IPR002885 Pentatricopeptide_repeat 753 782
IPR002885 Pentatricopeptide_repeat 473 498
IPR002885 Pentatricopeptide_repeat 291 318
IPR032867 DYW_dom 787 911
IPR002885 Pentatricopeptide_repeat 606 654
IPR002885 Pentatricopeptide_repeat 392 437
IPR002885 Pentatricopeptide_repeat 499 545
IPR002885 Pentatricopeptide_repeat 85 132
No external refs found!