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  5. Adi_g117141

Adi_g117141 (ATSMC2)


Aliases : ATSMC2

Description : component *(CAP-E2/SMC2) of condensin I/II complex & original description: none


Gene families : OG0005512 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g117141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193070 ATSMC2,... Cell cycle.mitosis and meiosis.chromatin... 0.07 OrthoFinder output from all 47 species
AT3G47460 ATSMC2 Structural maintenance of chromosomes (SMC) family protein 0.03 OrthoFinder output from all 47 species
AT5G62410 TTN3, ATSMC4,... structural maintenance of chromosomes 2 0.03 OrthoFinder output from all 47 species
Ala_g23199 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.09 OrthoFinder output from all 47 species
Als_g01195 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Aop_g05581 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.1 OrthoFinder output from all 47 species
Aspi01Gene72499.t1 ATSMC2, Aspi01Gene72499 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.05 OrthoFinder output from all 47 species
Ceric.12G044400.1 ATSMC2, Ceric.12G044400 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Ceric.15G020500.1 ATSMC2, Ceric.15G020500 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.55 TTN3, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
Cre02.g086650 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.03 OrthoFinder output from all 47 species
Dac_g14763 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Dcu_g03186 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
GSVIVT01018715001 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.03 OrthoFinder output from all 47 species
Gb_17843 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.04 OrthoFinder output from all 47 species
LOC_Os01g67740.1 ATSMC2, LOC_Os01g67740 component CAP-E2/SMC2 of condensin I/II complex 0.04 OrthoFinder output from all 47 species
Len_g12256 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.04 OrthoFinder output from all 47 species
Lfl_g37430 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
MA_15346g0010 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.02 OrthoFinder output from all 47 species
Mp1g04330.1 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.07 OrthoFinder output from all 47 species
Msp_g14469 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Nbi_g02470 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Ppi_g29913 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002205 ATSMC2 not classified & original description: CDS=1309-2196 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025517 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Sam_g14601 No alias component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Smo137981 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
Solyc03g093250.2.1 ATSMC2, Solyc03g093250 component CAP-E2/SMC2 of condensin I/II complex 0.04 OrthoFinder output from all 47 species
Solyc03g093260.3.1 ATSMC2, Solyc03g093260 component CAP-E2/SMC2 of condensin I/II complex 0.06 OrthoFinder output from all 47 species
Spa_g41237 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.05 OrthoFinder output from all 47 species
Tin_g10631 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.09 OrthoFinder output from all 47 species
Zm00001e018930_P001 ATSMC2, Zm00001e018930 component CAP-E2/SMC2 of condensin I/II complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0015562 efflux transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 269 544
IPR003423 OMP_efflux 181 292
No external refs found!