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  5. Adi_g113500

Adi_g113500


Description : Rab GTPase-activating protein *(RabGAP21) & original description: none


Gene families : OG0002854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002854_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g113500

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00051p00106780 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Aspi01Gene17588.t1 Aspi01Gene17588 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015579001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.04 OrthoFinder output from all 47 species
Pir_g11331 No alias Rab GTPase-activating protein *(RabGAP21) & original... 0.03 OrthoFinder output from all 47 species
Sam_g16736 No alias Rab GTPase-activating protein *(RabGAP21) & original... 0.02 OrthoFinder output from all 47 species
Sam_g29817 No alias Rab GTPase-activating protein *(RabGAP21) & original... 0.02 OrthoFinder output from all 47 species
Smo96534 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Solyc07g008000.4.1 Solyc07g008000 RAB-GTPase-activating protein (RAB-GAP) 0.03 OrthoFinder output from all 47 species
Spa_g11025 No alias Rab GTPase-activating protein *(RabGAP21) & original... 0.02 OrthoFinder output from all 47 species
Tin_g05182 No alias Rab GTPase-activaTing protein *(RabGAP21) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR021935 SGSM1/2_RBD 50 196
IPR000195 Rab-GTPase-TBC_dom 332 504
No external refs found!