1. Home
  2. Species
  3. Actinostachys digitata
  4. Sequence
  5. Adi_g113421

Adi_g113421


Description : not classified & original description: none


Gene families : OG0000906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000906_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g113421
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT5G20290 No alias Ribosomal protein S8e family protein 0.08 OrthoFinder output from all 47 species
Adi_g122203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38098 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Aop_g11567 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g32909 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Aop_g47989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g69923 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.01G124400.1 Ceric.01G124400 component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.12G096700.1 Ceric.12G096700 component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020610.79 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre06.g272800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
Dac_g03069 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Dac_g26233 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g29644 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01006249001 No alias 40S ribosomal protein S8 OS=Zea mays 0.03 OrthoFinder output from all 47 species
GSVIVT01031566001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
Gb_28325 No alias component RPS8 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os02g28810.1 LOC_Os02g28810 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.05 OrthoFinder output from all 47 species
LOC_Os04g28180.1 LOC_Os04g28180 component RPS8 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.06 OrthoFinder output from all 47 species
Msp_g18199 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g03638 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pp3c13_20020V3.1 Pp3c13_20020 Ribosomal protein S8e family protein 0.04 OrthoFinder output from all 47 species
Pp3c19_6490V3.1 Pp3c19_6490 Ribosomal protein S8e family protein 0.02 OrthoFinder output from all 47 species
Pp3c4_11370V3.1 Pp3c4_11370 Ribosomal protein S8e family protein 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008597 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023905 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g06814 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g15855 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g19629 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g27314 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Solyc06g007570.3.1 Solyc06g007570 component RPS8 of SSU proteome 0.06 OrthoFinder output from all 47 species
Solyc06g083180.4.1 Solyc06g083180 component RPS8 of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc09g057650.3.1 Solyc09g057650 component RPS8 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc10g006070.3.1 Solyc10g006070 component RPS8 of SSU proteome 0.04 OrthoFinder output from all 47 species
Spa_g35475 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53727 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g03723 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e004092_P002 Zm00001e004092 component RPS8 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e024994_P001 Zm00001e024994 component RPS8 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e024995_P001 Zm00001e024995 component RPS8 of SSU proteome 0.07 OrthoFinder output from all 47 species
Zm00001e024996_P001 Zm00001e024996 component RPS8 of SSU proteome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 6 224
No external refs found!