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  5. Adi_g112661

Adi_g112661 (TGH)


Aliases : TGH

Description : component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex & original description: none


Gene families : OG0004570 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004570_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g112661

Target Alias Description ECC score Gene Family Method Actions
AT5G23080 TGH SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 0.03 OrthoFinder output from all 47 species
Ala_g12092 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Als_g01945 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Aop_g20730 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Azfi_s0018.g014861 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Ceric.03G041500.1 TGH, Ceric.03G041500 component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.29 TGH RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Dac_g20945 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Dcu_g15206 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Lfl_g10031 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
MA_10431106g0020 TGH component TOUGH of DCL1-HYL1 miRNA biogenesis complex 0.04 OrthoFinder output from all 47 species
MA_10431866g0010 TGH no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g06200.1 TGH component TOUGH of DCL1-HYL1 miRNA biogenesis complex 0.05 OrthoFinder output from all 47 species
Smo80512 TGH RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Spa_g12253 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Tin_g11519 TGH component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex... 0.03 OrthoFinder output from all 47 species
Zm00001e036975_P003 TGH, Zm00001e036975 component TOUGH of DCL1-HYL1 miRNA biogenesis complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000467 G_patch_dom 160 182
IPR011666 DUF1604 43 118
IPR000061 Surp 416 465
No external refs found!