Adi_g109165 (AtLIG6, LIG6)

Aliases : AtLIG6, LIG6

Description : EC_6.5 ligase forming phosphoric ester bond & original description: none

Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g109165

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00018040	ATLIG1, LIG1,...	DNA damage response.DNA repair mechanisms.base excision...	0.02	OrthoFinder output from all 47 species
AT1G08130	ATLIG1, LIG1	DNA ligase 1	0.02	OrthoFinder output from all 47 species
Aop_g65805	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.05	OrthoFinder output from all 47 species
Ceric.28G053000.1	ATLIG1, LIG1,...	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species
Cre07.g325716	ATLIG1, LIG1	DNA damage response.DNA repair mechanisms.base excision...	0.02	OrthoFinder output from all 47 species
Ehy_g20815	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.03	OrthoFinder output from all 47 species
LOC_Os01g49180.1	AtLIG6, LIG6,...	DNA ligase (LIG6)	0.03	OrthoFinder output from all 47 species
LOC_Os10g34750.1	ATLIG1, LIG1,...	DNA replication DNA ligase (LIG1). DNA ligase (LIG1)	0.02	OrthoFinder output from all 47 species
Lfl_g09242	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
MA_10044742g0010	ATLIG1, LIG1	DNA ligase 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_10427015g0010	AtLIG6, LIG6	DNA ligase 6 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp1g15320.1	ATLIG1, LIG1	DNA replication DNA ligase (LIG1). DNA ligase (LIG1)	0.03	OrthoFinder output from all 47 species
Mp2g23970.1	AtLIG6, LIG6	DNA ligase (LIG6)	0.01	OrthoFinder output from all 47 species
Ore_g33229	AtLIG6, LIG6	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Ore_g44192	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Pir_g18058	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.04	OrthoFinder output from all 47 species
Ppi_g48452	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Zm00001e004508_P002	ATLIG1, LIG1,...	DNA replication DNA ligase (LIG1). DNA ligase (LIG1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012310	DNA_ligase_ATP-dep_cent	1117	1336
IPR011084	DRMBL	342	445
IPR012309	DNA_ligase_ATP-dep_C	1362	1471
IPR012308	DNA_ligase_ATP-dep_N	876	1052

External Links

No external refs found!

Adi_g109165 (AtLIG6, LIG6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation