GSVIVT01008062001


Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01008062001
Cluster HCCA cluster: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AT1G80170 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT2G41850 ADPG2, PGAZAT polygalacturonase abscission zone A. thaliana 0.03 Gene family
AT3G07970 QRT2 Pectin lyase-like superfamily protein 0.05 Gene family
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.03 Gene family
AT5G27530 No alias Pectin lyase-like superfamily protein 0.04 Gene family
AT5G39910 No alias Pectin lyase-like superfamily protein 0.03 Gene family
AT5G44830 No alias Pectin lyase-like superfamily protein 0.04 Gene family
GSVIVT01017302001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01017305001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
GSVIVT01032114001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01033303001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01033364001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01038447001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.05 Gene family
MA_285723g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Smo111266 PACid_15408883 No description available 0.02 Gene family
Solyc01g087280.1.1 Solyc01g087280.1 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc10g080210.2.1 Solyc10g080210.2 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d013032 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 134 366
No external refs found!