Adi_g106051

Description : not classified & original description: none

Gene families : OG0002027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g106051

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00111480	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.exosome complex.associated...	0.03	OrthoFinder output from all 47 species
Aspi01Gene54547.t1	Aspi01Gene54547	exoribonuclease *(RRP6L) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.03G064200.1	Ceric.03G064200	not classified & original description: pacid=50572735...	0.03	OrthoFinder output from all 47 species
Dcu_g36294	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01029953001	No alias	RNA processing.RNA decay.exosome complex.associated...	0.04	OrthoFinder output from all 47 species
Lfl_g02289	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g23954	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g20342	No alias	exoribonuclease *(RRP6L) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g51390	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc10g018520.1.1	Solyc10g018520	exoribonuclease (RRP6L)	0.04	OrthoFinder output from all 47 species
Spa_g12919	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEA	Interproscan
CC	GO:0000178	exosome (RNase complex)	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905354	exoribonuclease complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012588	Exosome-assoc_fac_Rrp6_N	29	112

External Links

No external refs found!