Description : 29.2.3 protein.synthesis.initiation Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. eukaryotic elongation factor 5A-1 (ELF5A-1)

Gene families : OG_01_0001392 (Gene family) Phylogenetic Tree(s): OG0001392_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01007954001
Cluster HCCA cluster: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AT1G26630 ATELF5A-2, FBR12, ELF5A-2 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein 0.02 Gene family
MA_49950g0010 No alias 29.2.3 protein.synthesis.initiation Encodes eukaryotic... 0.02 Gene family
Zm00001d007940 GRMZM2G082974 29.2.3 protein.synthesis.initiation Encodes eukaryotic... 0.02 Gene family
Zm00001d022042 GRMZM2G144030 29.2.3 protein.synthesis.initiation Encodes eukaryotic... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan
MF GO:0003746 translation elongation factor activity IEA InterProScan
BP GO:0006452 translational frameshifting IEA InterProScan
MF GO:0043022 ribosome binding IEA InterProScan
BP GO:0045901 positive regulation of translational elongation IEA InterProScan
BP GO:0045905 positive regulation of translational termination IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR020189 Transl_elong_IF5A_C 85 154
No external refs found!