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  5. Ehy_g18300

Ehy_g18300


Description : RNA editing factor *(OZ) & original description: none


Gene families : OG0001673 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001673_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g18300

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00170p00058310 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G48570 No alias zinc finger (Ran-binding) family protein 0.02 OrthoFinder output from all 47 species
AT1G55040 No alias zinc finger (Ran-binding) family protein 0.04 OrthoFinder output from all 47 species
Adi_g003867 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g084389 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108029 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20942 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19541 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19944 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15963 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g42021 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60534.t1 Aspi01Gene60534 RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g14180 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G001300.1 Ceric.03G001300 RNA editing factor *(OZ) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.26G046600.1 Ceric.26G046600 RNA editing factor *(OZ) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g16799 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000088001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01008444001 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
LOC_Os01g10630.1 LOC_Os01g10630 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os03g50120.1 LOC_Os03g50120 RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
LOC_Os03g50430.1 LOC_Os03g50430 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
LOC_Os07g22024.1 LOC_Os07g22024 RNA editing factor (OZ-type) 0.04 OrthoFinder output from all 47 species
Lfl_g06216 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18415 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10436123g0010 No alias RNA editing factor (OZ-type) 0.06 OrthoFinder output from all 47 species
MA_10436123g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
Nbi_g15706 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00990 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55843 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06378 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07101 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50896 No alias RNA editing factor *(OZ) & original description: none 0.02 OrthoFinder output from all 47 species
Smo438605 No alias Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g099230.3.1 Solyc01g099230 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species
Spa_g11918 No alias RNA editing factor *(OZ) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21486 No alias RNA editing factor *(OZ) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012200_P002 Zm00001e012200 RNA editing factor (OZ-type) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 517 545
IPR001876 Znf_RanBP2 485 508
No external refs found!