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  5. Adi_g103622

Adi_g103622


Description : component *(eS4) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002077 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002077_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g103622
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
AT2G17360 No alias Ribosomal protein S4 (RPS4A) family protein 0.04 OrthoFinder output from all 47 species
AT5G58420 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0091.g042854 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.01G129200.1 Ceric.01G129200 component *(eS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.10G002500.1 Ceric.10G002500 component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cre06.g308250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
Dcu_g50161 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01030295001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os01g25610.1 LOC_Os01g25610 component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os02g01560.1 LOC_Os02g01560 component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os05g30530.1 LOC_Os05g30530 component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
MA_127596g0010 No alias component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.02 OrthoFinder output from all 47 species
Nbi_g03427 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c11_3690V3.1 Pp3c11_3690 Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Pp3c1_8290V3.1 Pp3c1_8290 Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Pp3c7_23800V3.1 Pp3c7_23800 Ribosomal protein S4 (RPS4A) family protein 0.03 OrthoFinder output from all 47 species
Sam_g27350 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Solyc02g070330.4.1 Solyc02g070330 component RPS4 of SSU proteome 0.02 OrthoFinder output from all 47 species
Spa_g05578 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Tin_g02542 No alias component *(eS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e006307_P001 Zm00001e006307 component RPS4 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e011676_P001 Zm00001e011676 component RPS4 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030248 cellulose binding IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 46 90
IPR032277 40S_S4_C 226 270
IPR013843 Ribosomal_S4e_N 3 39
IPR013845 Ribosomal_S4e_central_region 95 182
No external refs found!