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  5. Adi_g103599

Adi_g103599


Description : SSU processome assembly factor *(UTP21) & original description: none


Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g103599

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0074.g037313 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Ceric.19G039200.1 Ceric.19G039200 SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021348.51 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre10.g466250 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g02020 No alias SSU processome assembly factor *(UTP21) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g18111 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Gb_24979 No alias SSU processome assembly factor (UTP21) 0.03 OrthoFinder output from all 47 species
LOC_Os06g43690.1 LOC_Os06g43690 SSU processome assembly factor (UTP21) 0.04 OrthoFinder output from all 47 species
Smo78691 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc01g087670.3.1 Solyc01g087670 SSU processome assembly factor (UTP21) 0.04 OrthoFinder output from all 47 species
Tin_g11820 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007319 SSU_processome_Utp21 698 918
IPR001680 WD40_repeat 556 590
IPR001680 WD40_repeat 476 507
IPR024977 Apc4_WD40_dom 193 280
No external refs found!