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  5. MA_12327g0010

MA_12327g0010


Description : DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica (sp|q5vry0|rh39_orysj : 324.0)


Gene families : OG_01_0005822 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005822_tree ,
OG_02_0008168 (LandPlants) Phylogenetic Tree(s): OG_02_0008168_tree ,
OG_03_0009649 (SeedPlants) Phylogenetic Tree(s): OG_03_0009649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_12327g0010
Cluster HCCA: Cluster_301

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00161460 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.06 Archaeplastida
AT4G09730 RH39 RH39 0.05 Archaeplastida
Cpa|evm.model.tig00020961.8 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.01 Archaeplastida
Cre01.g033832 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.01 Archaeplastida
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 Archaeplastida
Mp5g09580.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 Archaeplastida
Pp3c22_7840V3.1 No alias RH39 0.03 Archaeplastida
Solyc12g056740.2.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.07 Archaeplastida
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.08 Archaeplastida
AMTR_s00078p00161460 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 LandPlants
AT4G09730 RH39 RH39 0.04 LandPlants
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 LandPlants
Mp5g09580.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 LandPlants
Pp3c22_7840V3.1 No alias RH39 0.03 LandPlants
Solyc12g056740.2.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 LandPlants
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.06 LandPlants
AMTR_s00078p00161460 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 SeedPlants
AT4G09730 RH39 RH39 0.04 SeedPlants
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 SeedPlants
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.01 SeedPlants
Solyc12g056740.2.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 SeedPlants
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 120 298
No external refs found!