Adi_g089369 (HVT1, ATVT-1)

Aliases : HVT1, ATVT-1

Description : not classified & original description: none

Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g089369

Target	Alias	Description	ECC score	Gene Family Method
AT1G06670	NIH	nuclear DEIH-boxhelicase	0.02	OrthoFinder output from all 47 species
AT2G30800	HVT1, ATVT-1	helicase in vascular tissue and tapetum	0.04	OrthoFinder output from all 47 species
Ala_g10871	HVT1, ATVT-1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g20539	HVT1, ATVT-1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g16527	HVT1, ATVT-1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.16G053600.1	HVT1, ATVT-1,...	not classified & original description: pacid=50590253...	0.05	OrthoFinder output from all 47 species
Dac_g12090	HVT1, ATVT-1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g02016	HVT1, ATVT-1	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ehy_g12887	HVT1, ATVT-1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01020822001	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Gb_13707	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g56190.1	HVT1, ATVT-1,...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Lfl_g02414	HVT1, ATVT-1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
MA_10434659g0010	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp3g02150.1	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Ore_g26937	HVT1, ATVT-1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g44296	HVT1, ATVT-1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo50132	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc07g044930.3.1	HVT1, ATVT-1,...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e028983_P004	HVT1, ATVT-1,...	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	623	745
IPR001374	R3H_dom	90	146
IPR011709	DEAD-box_helicase_OB_fold	970	1060
IPR007502	Helicase-assoc_dom	810	901
IPR011545	DEAD/DEAH_box_helicase_dom	263	413

External Links

No external refs found!

Adi_g089369 (HVT1, ATVT-1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation