Adi_g088539 (HSS, ARF1-BP, ARF2, ORE14)

Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g088539

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00157690	ARF6,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Adi_g001040	ARF11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g011925	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g054964	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g055832	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g084657	ARF19, IAA22, ARF11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11735	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11834	ARF16	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g14726	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g32717	ARF8, ATARF8	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene05880.t1	ARF19, IAA22,...	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene29721.t1	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene55123.t1	ARF6, Aspi01Gene55123	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0011.g012740	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: CDS=1-2724	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035934	No alias	not classified & original description: CDS=1-342	0.02	OrthoFinder output from all 47 species
Cba_g37448	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01003591001	No alias	No description available	0.02	OrthoFinder output from all 47 species
GSVIVT01020805001	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01023149001	ARF1	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
GSVIVT01025159001	ARF4	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01035204001	ARF8, ATARF8	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
GSVIVT01035205001	ARF8, ATARF8	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Gb_31132	ARF4	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os01g48060.1	ARF3, ETT, LOC_Os01g48060	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os04g36054.1	ARF1, LOC_Os04g36054	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os04g56850.1	MP, IAA24, ARF5,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
MA_127981g0010	ARF4	Auxin response factor 4 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Ore_g10460	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42999	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g04439	ARF10	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g26224	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g103050.3.1	ARF1, Solyc01g103050	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc04g081240.2.1	MP, IAA24, ARF5,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Spa_g05322	ARF8, ATARF8	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e013061_P001	ARF16, Zm00001e013061	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e028396_P001	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0008037	cell recognition	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	126	227
IPR010525	ARF_dom	252	332

External Links

No external refs found!

Adi_g088539 (HSS, ARF1-BP, ARF2, ORE14)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation