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  5. Adi_g088167

Adi_g088167 (MAC3B)


Aliases : MAC3B

Description : E3 ubiquitin protein ligase *(PUB60) & original description: none


Gene families : OG0002806 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g088167

Target Alias Description ECC score Gene Family Method Actions
AT1G04510 MAC3A MOS4-associated complex 3A 0.02 OrthoFinder output from all 47 species
Adi_g109115 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15635 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G040200.1 MAC3A, Ceric.06G040200 E3 ubiquitin protein ligase *(PUB60) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001501.3 MAC3B Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001501.4 MAC3A Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.5 MAC3B Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Dcu_g02996 MAC3A E3 ubiquitin protein ligase *(PUB60) & original description: none 0.04 OrthoFinder output from all 47 species
MA_20260g0010 MAC3A component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Mp4g08560.1 MAC3A component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Msp_g02452 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11129 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17949 MAC3B E3 ubiquitin protein ligase *(PUB60) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15915 No alias E3 ubiquitin protein ligase *(PUB60) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g090660.3.1 MAC3A, Solyc09g090660 component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Zm00001e004625_P001 MAC3B, Zm00001e004625 component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species
Zm00001e012723_P001 MAC3B, Zm00001e012723 component MAC3 of non-snRNP MOS4-associated complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 217 254
IPR001680 WD40_repeat 172 208
IPR013915 Pre-mRNA_splic_Prp19 1 49
No external refs found!