Description : nucleoporin of nuclear pore complex *(NUP98) & original description: none
Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G10390 | No alias | Nucleoporin autopeptidase | 0.02 | OrthoFinder output from all 47 species | |
Ala_g06973 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.05 | OrthoFinder output from all 47 species | |
Als_g14624 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g62728 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene05169.t1 | NUP96, PRE,... | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene58837.t2 | Aspi01Gene58837 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Azfi_s0003.g007590 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g09959 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.23G078300.1 | Ceric.23G078300 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.28G024900.1 | Ceric.28G024900 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.29G008200.1 | NUP96, PRE,... | scaffold nucleoporin of nuclear pore complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Cre02.g086887 | No alias | Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
Dcu_g22620 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.07 | OrthoFinder output from all 47 species | |
Dde_g00954 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01019716001 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.02 | OrthoFinder output from all 47 species | |
Gb_07065 | No alias | NUP98 nucleoporin of nuclear pore complex | 0.02 | OrthoFinder output from all 47 species | |
Gb_29033 | NUP96, PRE, SAR3, MOS3 | NUP96 scaffold nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g28690.2 | LOC_Os01g28690 | NUP98 nucleoporin of nuclear pore complex | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g07580.1 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os12g06890.1 | LOC_Os12g06890 | NUP98 nucleoporin of nuclear pore complex | 0.02 | OrthoFinder output from all 47 species | |
MA_10434126g0020 | NUP96, PRE, SAR3, MOS3 | NUP96 scaffold nucleoporin of nuclear pore complex | 0.02 | OrthoFinder output from all 47 species | |
Msp_g06362 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g01454 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g05465 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g15205 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g22018 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g26256 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sam_g35134 | No alias | scaffold nucleoporin of nuclear pore complex & original... | 0.02 | OrthoFinder output from all 47 species | |
Smo139717 | NUP96, PRE, SAR3, MOS3 | Protein translocation.nucleus.nucleocytoplasmic... | 0.04 | OrthoFinder output from all 47 species | |
Solyc03g117120.4.1 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.05 | OrthoFinder output from all 47 species | |
Solyc04g007280.3.1 | Solyc04g007280 | NUP98 nucleoporin of nuclear pore complex | 0.05 | OrthoFinder output from all 47 species | |
Spa_g06165 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g11653 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e020801_P003 | Zm00001e020801 | NUP98 nucleoporin of nuclear pore complex | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e038897_P001 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005643 | nuclear pore | IEA | Interproscan |
BP | GO:0006913 | nucleocytoplasmic transport | IEA | Interproscan |
MF | GO:0017056 | structural constituent of nuclear pore | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006284 | base-excision repair | IEP | HCCA |
BP | GO:0006298 | mismatch repair | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006479 | protein methylation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006950 | response to stress | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008170 | N-methyltransferase activity | IEP | HCCA |
BP | GO:0008213 | protein alkylation | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
MF | GO:0008276 | protein methyltransferase activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016278 | lysine N-methyltransferase activity | IEP | HCCA |
MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | HCCA |
BP | GO:0016570 | histone modification | IEP | HCCA |
BP | GO:0016571 | histone methylation | IEP | HCCA |
MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | HCCA |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | HCCA |
MF | GO:0018024 | histone lysine N-methyltransferase activity | IEP | HCCA |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
MF | GO:0019104 | DNA N-glycosylase activity | IEP | HCCA |
MF | GO:0019842 | vitamin binding | IEP | HCCA |
MF | GO:0019899 | enzyme binding | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0030976 | thiamine pyrophosphate binding | IEP | HCCA |
MF | GO:0031267 | small GTPase binding | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034968 | histone lysine methylation | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0042054 | histone methyltransferase activity | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
MF | GO:0050997 | quaternary ammonium group binding | IEP | HCCA |
MF | GO:0051020 | GTPase binding | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
MF | GO:1901681 | sulfur compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007230 | Nup98_auto-Pept-S59_dom | 618 | 687 |
No external refs found! |