MA_111652g0010


Description : chromatin remodeling factor (Rad5)


Gene families : OG_01_0000572 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000572_tree ,
OG_02_0003266 (LandPlants) Phylogenetic Tree(s): OG_02_0003266_tree ,
OG_03_0004582 (SeedPlants) Phylogenetic Tree(s): OG_03_0004582_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_111652g0010
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00226100 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
Cpa|evm.model.tig00021105.35 No alias DNA repair protein RAD5B OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01027728001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
LOC_Os08g08220.1 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.02 Archaeplastida
Solyc03g005460.4.1 No alias chromatin remodeling factor (Rad5) 0.05 Archaeplastida
Solyc11g066790.2.1 No alias chromatin remodeling factor (Rad5) 0.05 Archaeplastida
Solyc12g020110.2.1 No alias chromatin remodeling factor (Rad5) 0.03 Archaeplastida
Zm00001e022169_P001 No alias chromatin remodeling factor (Rad5) 0.18 Archaeplastida
Zm00001e028953_P002 No alias chromatin remodeling factor (Ris1) 0.04 Archaeplastida
GSVIVT01027728001 No alias Chromatin organisation.chromatin remodeling... 0.03 LandPlants
Solyc03g005460.4.1 No alias chromatin remodeling factor (Rad5) 0.05 LandPlants
Solyc11g066790.2.1 No alias chromatin remodeling factor (Rad5) 0.04 LandPlants
Zm00001e022169_P001 No alias chromatin remodeling factor (Rad5) 0.16 LandPlants
AMTR_s00040p00226100 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.01 SeedPlants
AT5G22750 RAD5 DNA/RNA helicase protein 0.02 SeedPlants
GSVIVT01027728001 No alias Chromatin organisation.chromatin remodeling... 0.02 SeedPlants
Solyc03g005460.4.1 No alias chromatin remodeling factor (Rad5) 0.04 SeedPlants
Solyc11g066790.2.1 No alias chromatin remodeling factor (Rad5) 0.03 SeedPlants
Zm00001e022169_P001 No alias chromatin remodeling factor (Rad5) 0.15 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000330 SNF2_dom 423 808
IPR001650 Helicase_C 933 1045
IPR014905 HIRAN 191 293
No external refs found!