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  5. Adi_g082348

Adi_g082348 (RPD1)


Aliases : RPD1

Description : not classified & original description: none


Gene families : OG0004302 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004302_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g082348
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00049810 evm_27.TU.AmTr_v1... Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G06440 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.05 OrthoFinder output from all 47 species
AT4G33495 RPD1 Ubiquitin carboxyl-terminal hydrolase family protein 0.05 OrthoFinder output from all 47 species
Ceric.35G059500.1 RPD1, Ceric.35G059500 not classified & original description: pacid=50580998... 0.03 OrthoFinder output from all 47 species
Dcu_g50671 RPD1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01025854001 No alias Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os09g35740.1 LOC_Os09g35740 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g26057 RPD1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g35248 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03187 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031179 peptide modification IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 68 396
No external refs found!