Ehy_g15816 (NRPD5, ATRPABC24.3,...)


Aliases : NRPD5, ATRPABC24.3, NRPB5, RPB5A

Description : component *(NRPD5) of RNA polymerase IV complex & original description: none


Gene families : OG0003853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003853_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g15816

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00034280 NRPD5,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Sam_g06312 No alias component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Sam_g06313 No alias component *(NRPE5) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Sam_g21440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo228648 NRPD5,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Solyc03g025570.2.1 NRPD5,... subunit 5 of RNA polymerase 0.02 OrthoFinder output from all 47 species
Solyc05g051790.3.1 NRPD5,... subunit 5 of RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
CC GO:0008303 caspase complex IEP HCCA
BP GO:0016255 attachment of GPI anchor to protein IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0042765 GPI-anchor transamidase complex IEP HCCA
CC GO:0071203 WASH complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR005571 RNA_pol_Rpb5_N 3 87
IPR000783 RNA_pol_subH/Rpb5_C 130 202
No external refs found!