GSVIVT01001083001


Description : 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres. SU(VAR)3-9 homolog 4 (SUVH4)


Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01001083001
Cluster HCCA cluster: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
LOC_Os07g25450 Os07g0435900 27.3.69 RNA.regulation of transcription.SET-domain... 0.01 Gene family
MA_106068g0010 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.01 Gene family
MA_279935g0010 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family
Solyc08g077940.2.1 Solyc08g077940.2 No description available 0.03 Gene family
Zm00001d019520 GRMZM2G034288 27.3.69 RNA.regulation of transcription.SET-domain... 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007728 Pre-SET_dom 204 302
IPR003105 SRA_YDG 19 173
IPR001214 SET_dom 321 455
No external refs found!