GSVIVT01000968001


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01000968001
Cluster HCCA cluster: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Gene family
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.07 Gene family
AT1G20230 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT1G56570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT2G27610 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
AT3G11460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT5G19020 MEF18 mitochondrial editing factor 18 0.03 Gene family
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
LOC_Os01g72930 Os01g0959600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os04g35650 Os04g0436800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os04g41120 Os04g0488200 No description available 0.02 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os07g05560 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os07g20420 Os07g0299800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os08g38610 Os08g0494200,... No description available 0.02 Gene family
LOC_Os08g40020 Os08g0511000 No description available 0.03 Gene family
LOC_Os11g01836 Os11g0109600 No description available 0.04 Gene family
LOC_Os11g45410 Os11g0679900,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_100287g0010 No alias No description available 0.02 Gene family
MA_101084g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_10426261g0020 No alias No description available 0.02 Gene family
MA_105629g0010 No alias 35.1.27 not assigned.no ontology.tetratricopeptide... 0.02 Gene family
MA_1109g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_121267g0010 No alias No description available 0.04 Gene family
MA_136326g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_16823g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_177435g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_17949g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_185098g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_20599g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_20782g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_210823g0010 No alias No description available 0.02 Gene family
MA_286190g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_2991g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_32723g0010 No alias No description available 0.02 Gene family
MA_34492g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_483636g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_501007g0010 No alias No description available 0.02 Gene family
MA_519985g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_75133g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_77675g0010 No alias No description available 0.02 Gene family
MA_8868720g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_9258g0010 No alias No description available 0.02 Gene family
MA_9526611g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Smo47998 PACid_15423210 No description available 0.02 Gene family
Smo89230 PACid_15407693 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc01g006920.3.1 Solyc01g006920.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc01g010510.3.1 Solyc01g010510.3 No description available 0.04 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.03 Gene family
Solyc01g091610.1.1 Solyc01g091610.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc01g100800.2.1 Solyc01g100800.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g079380.2.1 Solyc02g079380.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc02g088650.1.1 Solyc02g088650.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc02g094480.3.1 Solyc02g094480.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc03g063160.1.1 Solyc03g063160.1 No description available 0.04 Gene family
Solyc03g093630.2.1 Solyc03g093630.2 No description available 0.05 Gene family
Solyc03g098420.3.1 Solyc03g098420.3 No description available 0.04 Gene family
Solyc03g116000.1.1 Solyc03g116000.1 No description available 0.05 Gene family
Solyc04g063300.2.1 Solyc04g063300.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc04g064750.2.1 Solyc04g064750.2 No description available 0.07 Gene family
Solyc04g076330.2.1 Solyc04g076330.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc05g012630.1.1 Solyc05g012630.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc06g066080.1.1 Solyc06g066080.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.05 Gene family
Solyc07g008480.2.1 Solyc07g008480.2 No description available 0.04 Gene family
Solyc07g053520.2.1 Solyc07g053520.2 No description available 0.04 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc08g023640.1.1 Solyc08g023640.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc08g078570.2.1 Solyc08g078570.2 No description available 0.03 Gene family
Solyc09g007040.1.1 Solyc09g007040.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc09g009790.3.1 Solyc09g009790.3 No description available 0.02 Gene family
Solyc09g009950.3.1 Solyc09g009950.3 No description available 0.04 Gene family
Solyc09g059580.2.1 Solyc09g059580.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc09g065710.1.1 Solyc09g065710.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc11g005960.1.1 Solyc11g005960.1 No description available 0.08 Gene family
Solyc11g007230.1.1 Solyc11g007230.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g008940.1.1 Solyc11g008940.1 No description available 0.03 Gene family
Solyc11g008970.1.1 Solyc11g008970.1 No description available 0.06 Gene family
Solyc11g067210.1.1 Solyc11g067210.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d003047 GRMZM2G077420 No description available 0.05 Gene family
Zm00001d003786 GRMZM2G153275 No description available 0.04 Gene family
Zm00001d013941 GRMZM2G073017 No description available 0.05 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d025870 GRMZM5G827485 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d028422 GRMZM2G019689 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d030143 GRMZM2G430710 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d037891 No alias No description available 0.07 Gene family
Zm00001d039873 GRMZM2G380195 No description available 0.03 Gene family
Zm00001d042039 GRMZM2G060536 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d042067 GRMZM2G099875 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d051816 GRMZM2G029859 No description available 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 610 734
IPR002885 Pentatricopeptide_repeat 106 134
IPR002885 Pentatricopeptide_repeat 511 535
IPR002885 Pentatricopeptide_repeat 75 103
IPR002885 Pentatricopeptide_repeat 178 199
IPR002885 Pentatricopeptide_repeat 380 401
IPR002885 Pentatricopeptide_repeat 406 453
IPR002885 Pentatricopeptide_repeat 304 352
IPR002885 Pentatricopeptide_repeat 203 250
No external refs found!