AMTR_s00168p00048800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00168.14

Description : Chromatin organisation.histones.H2A-type histone


Gene families : OG_01_0000174 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000174_tree ,
OG_02_0000204 (LandPlants) Phylogenetic Tree(s): OG_02_0000204_tree ,
OG_03_0000166 (SeedPlants) Phylogenetic Tree(s): OG_03_0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00168p00048800
Cluster HCCA: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.03 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.02 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.03 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g590800 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g591150 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_37579 No alias histone (H2A) 0.06 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.03 Archaeplastida
MA_9379473g0010 No alias histone (H2A) 0.02 Archaeplastida
Mp2g00760.1 No alias histone (H2A) 0.03 Archaeplastida
Mp3g00840.1 No alias histone (H2A) 0.02 Archaeplastida
Pp3c6_29410V3.1 No alias histone H2A 10 0.02 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.04 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.02 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.03 LandPlants
Gb_07070 No alias histone (H2A) 0.02 LandPlants
Gb_25326 No alias histone (H2A) 0.02 LandPlants
Gb_37579 No alias histone (H2A) 0.03 LandPlants
Gb_39944 No alias histone (H2A) 0.02 LandPlants
LOC_Os08g33100.1 No alias histone (H2A) 0.02 LandPlants
MA_169054g0020 No alias histone (H2A) 0.03 LandPlants
MA_22203g0020 No alias histone (H2A) 0.02 LandPlants
MA_427046g0010 No alias histone (H2A) 0.02 LandPlants
MA_7320190g0010 No alias histone (H2A) 0.02 LandPlants
MA_74667g0010 No alias histone (H2A) 0.02 LandPlants
MA_962778g0010 No alias histone (H2A) 0.02 LandPlants
Mp2g00760.1 No alias histone (H2A) 0.03 LandPlants
Mp3g00840.1 No alias histone (H2A) 0.02 LandPlants
Pp3c6_29410V3.1 No alias histone H2A 10 0.02 LandPlants
Solyc09g074300.1.1 No alias histone (H2A) 0.02 LandPlants
Solyc12g005270.2.1 No alias histone (H2A) 0.03 LandPlants
Zm00001e010516_P001 No alias histone (H2A) 0.02 LandPlants
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.03 SeedPlants
Gb_07070 No alias histone (H2A) 0.02 SeedPlants
Gb_25326 No alias histone (H2A) 0.02 SeedPlants
Gb_37579 No alias histone (H2A) 0.03 SeedPlants
LOC_Os05g02300.1 No alias histone (H2A) 0.02 SeedPlants
LOC_Os07g36140.1 No alias histone (H2A) 0.02 SeedPlants
LOC_Os08g33100.1 No alias histone (H2A) 0.02 SeedPlants
MA_169054g0020 No alias histone (H2A) 0.03 SeedPlants
MA_213048g0010 No alias histone (H2A) 0.02 SeedPlants
MA_22203g0020 No alias histone (H2A) 0.02 SeedPlants
MA_427046g0010 No alias histone (H2A) 0.02 SeedPlants
MA_7320190g0010 No alias histone (H2A) 0.02 SeedPlants
MA_74667g0010 No alias histone (H2A) 0.02 SeedPlants
MA_962778g0010 No alias histone (H2A) 0.02 SeedPlants
Solyc09g074300.1.1 No alias histone (H2A) 0.02 SeedPlants
Solyc12g005270.2.1 No alias histone (H2A) 0.03 SeedPlants
Zm00001e010516_P001 No alias histone (H2A) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 26 98
No external refs found!