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  5. Adi_g066051

Adi_g066051


Description : component *(uS4) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g066051

Target Alias Description ECC score Gene Family Method Actions
AT5G15200 No alias Ribosomal protein S4 0.06 OrthoFinder output from all 47 species
Adi_g043204 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g15543 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g04820 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g06152 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene14214.t1 Aspi01Gene14214 component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0076.g037857 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0400.g068238 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.04G104600.1 Ceric.04G104600 component *(uS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.20G045700.1 Ceric.20G045700 component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cre08.g359750 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g13577 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g13407 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g23791 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ehy_g05268 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ehy_g05433 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01011384001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01020020001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_41315 No alias component RPS9 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os03g05980.1 LOC_Os03g05980 component RPS9 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os11g38959.1 LOC_Os11g38959 component RPS9 of SSU proteome 0.04 OrthoFinder output from all 47 species
MA_10429805g0030 No alias component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_10431745g0020 No alias component RPS9 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp3g00520.1 No alias component RPS9 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp6g10930.1 No alias component RPS9 of SSU proteome 0.03 OrthoFinder output from all 47 species
Msp_g17653 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Msp_g37588 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g11040 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ore_g33670 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c13_19780V3.1 Pp3c13_19780 Ribosomal protein S4 0.03 OrthoFinder output from all 47 species
Pp3c3_23720V3.1 Pp3c3_23720 Ribosomal protein S4 0.02 OrthoFinder output from all 47 species
Pp3c4_15290V3.1 Pp3c4_15290 Ribosomal protein S4 0.03 OrthoFinder output from all 47 species
Ppi_g27129 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g09460 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo157263 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo74302 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g010540.3.1 Solyc01g010540 component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species
Solyc01g010580.3.1 Solyc01g010580 component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species
Solyc04g005680.4.1 Solyc04g005680 component RPS9 of SSU proteome 0.05 OrthoFinder output from all 47 species
Solyc05g007250.3.1 Solyc05g007250 component RPS9 of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g05705 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g11414 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g19070 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g13815 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e010819_P002 Zm00001e010819 component RPS9 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e018345_P001 Zm00001e018345 component RPS9 of SSU proteome 0.05 OrthoFinder output from all 47 species
Zm00001e037961_P002 Zm00001e037961 component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 8 108
IPR002942 S4_RNA-bd 109 152
No external refs found!