Solyc12g096990.2.1 (Solyc12g096990.2)


Aliases : Solyc12g096990.2

Description : 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation. SU(VAR)3-9 homolog 9 (SUVH9)


Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc12g096990.2.1
Cluster HCCA cluster: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AT2G33290 ATSUVH2, SDG3, SUVH2 SU(VAR)3-9 homolog 2 0.02 Gene family
Cre02.g089200 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family
LOC_Os01g70220 Os01g0927000 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family
LOC_Os04g45990 Os04g0544100 No description available 0.02 Gene family
LOC_Os05g41172 Os05g0490700 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Solyc09g082050.3.1 Solyc09g082050.3 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Zm00001d011956 GRMZM2G054380 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family
Zm00001d019195 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan
MF GO:0008270 zinc ion binding IEA InterProScan
MF GO:0018024 histone-lysine N-methyltransferase activity IEA InterProScan
BP GO:0034968 histone lysine methylation IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001214 SET_dom 521 652
IPR007728 Pre-SET_dom 402 501
IPR003105 SRA_YDG 219 371
No external refs found!