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  5. Ehy_g14066

Ehy_g14066 (ATRDRP1, RDR1)


Aliases : ATRDRP1, RDR1

Description : not classified & original description: none


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g14066
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00176p00039530 ATRDRP1, RDR1,... RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G49500 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 0.02 OrthoFinder output from all 47 species
AT4G11130 SMD1, RDR2 RNA-dependent RNA polymerase 2 0.02 OrthoFinder output from all 47 species
Ala_g33594 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_08299 ATRDRP1, RDR1 Probable RNA-dependent RNA polymerase SHL2 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Gb_17277 ATRDRP1, RDR1 Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Gb_17278 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_28437 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g39160.1 SMD1, RDR2,... ssRNA polymerase (RDR2) 0.02 OrthoFinder output from all 47 species
Msp_g15315 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01470 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g28892 SMD1, RDR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09805 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10447 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g11476 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14128 ATRDRP1, RDR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25333 No alias ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g16349 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 401 976
No external refs found!