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Aliases : SHI
Description : SRS-type transcription factor & original description: none
Gene families : OG0001235 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001235_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Adi_g061023 | |
| Cluster | HCCA: Cluster_283 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00063p00161200 | LRP1,... | RNA biosynthesis.transcriptional activation.SRS... | 0.05 | OrthoFinder output from all 47 species | |
| AT1G19790 | SRS7 | SHI-related sequence 7 | 0.03 | OrthoFinder output from all 47 species | |
| AT1G75520 | SRS5 | SHI-related sequence 5 | 0.04 | OrthoFinder output from all 47 species | |
| AT2G18120 | SRS4 | SHI-related sequence 4 | 0.03 | OrthoFinder output from all 47 species | |
| AT4G36260 | SRS2, STY2 | Lateral root primordium (LRP) protein-related | 0.02 | OrthoFinder output from all 47 species | |
| AT5G12330 | LRP1 | Lateral root primordium (LRP) protein-related | 0.1 | OrthoFinder output from all 47 species | |
| AT5G66350 | SHI | Lateral root primordium (LRP) protein-related | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g058361 | SHI | SRS-type transcription factor & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Ala_g26536 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g23682 | SRS1, STY1 | SRS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g07658 | SHI | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g32553 | SHI | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene65745.t1 | SHI, Aspi01Gene65745 | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0062.g035174 | SHI | SRS-type transcription factor & original description: CDS=1-1092 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0065.g035783 | SHI | SRS-type transcription factor & original description: CDS=1-2148 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0385.g067525 | SHI | SRS-type transcription factor & original description: CDS=1-693 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.02G095600.1 | SHI, Ceric.02G095600 | SRS-type transcription factor & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.14G028100.1 | SRS1, STY1,... | SRS-type transcription factor & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.25G035200.1 | SRS1, STY1,... | SRS-type transcription factor & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.32G058400.1 | SRS1, STY1,... | SRS-type transcription factor & original description:... | 0.06 | OrthoFinder output from all 47 species | |
| Dac_g13440 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g16665 | SRS1, STY1 | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g40676 | SHI | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g30563 | SHI | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g47477 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g21838 | SRS1, STY1 | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01009812001 | SRS5 | RNA biosynthesis.transcriptional activation.SRS... | 0.08 | OrthoFinder output from all 47 species | |
| GSVIVT01018845001 | SHI | RNA biosynthesis.transcriptional activation.SRS... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01024206001 | SHI | RNA biosynthesis.transcriptional activation.SRS... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g72490.1 | LRP1, LOC_Os01g72490 | transcription factor (SRS) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g32070.1 | LRP1, LOC_Os05g32070 | transcription factor (SRS) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g49830.1 | SRS1, STY1,... | transcription factor (SRS) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os08g43410.1 | SRS1, STY1,... | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os09g36160.1 | SRS1, STY1,... | transcription factor (SRS) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g31120 | SHI | SRS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| MA_2299g0010 | LRP1 | transcription factor (SRS) | 0.05 | OrthoFinder output from all 47 species | |
| MA_53545g0010 | SRS1, STY1 | transcription factor (SRS) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g01643 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g32313 | SHI | SRS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g32314 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g26494 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g20607 | SRS1, STY1 | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g26315 | LRP1 | SRS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g16685 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g59296 | SHI | SRS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0051.g013968 | SHI | SRS-type transcription factor & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0150.g023316 | SRS1, STY1 | not classified & original description: CDS=12-590 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g084680.3.1 | SRS1, STY1,... | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc10g054070.1.1 | SRS5, Solyc10g054070 | transcription factor (SRS) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g064800.3.1 | LRP1, Solyc11g064800 | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g04911 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g50442 | SHI | SRS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g29778 | SRS1, STY1 | SRS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Tin_g30774 | SHI | SRS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e004006_P001 | SHI, Zm00001e004006 | transcription factor (SRS) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e010227_P001 | SRS1, STY1,... | transcription factor (SRS) | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e013256_P002 | SHI, Zm00001e013256 | transcription factor (SRS) | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e024681_P001 | SHI, Zm00001e024681 | transcription factor (SRS) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e026854_P001 | SHI, Zm00001e026854 | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e028304_P001 | LRP1, Zm00001e028304 | transcription factor (SRS) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e030189_P001 | SHI, Zm00001e030189 | transcription factor (SRS) | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e031567_P001 | LRP1, Zm00001e031567 | transcription factor (SRS) | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e034798_P001 | SRS1, STY1,... | transcription factor (SRS) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006811 | monoatomic ion transport | IEP | HCCA |
| BP | GO:0006820 | monoatomic anion transport | IEP | HCCA |
| BP | GO:0009605 | response to external stimulus | IEP | HCCA |
| BP | GO:0009606 | tropism | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010274 | hydrotropism | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0015299 | obsolete solute:proton antiporter activity | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |