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  5. Adi_g060542

Adi_g060542 (SPT16)


Aliases : SPT16

Description : component *(SPT16) of FACT histone chaperone complex & original description: none


Gene families : OG0002057 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002057_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g060542

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00682p00010920 SPT16,... Chromatin organisation.histone chaperone activities.FACT... 0.02 OrthoFinder output from all 47 species
AT4G10710 SPT16 global transcription factor C 0.02 OrthoFinder output from all 47 species
Aob_g33291 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.04 OrthoFinder output from all 47 species
Dcu_g03153 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g13439 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01031306001 SPT16 Chromatin organisation.histone chaperone activities.FACT... 0.02 OrthoFinder output from all 47 species
GSVIVT01031308001 SPT16 Chromatin organisation.histone chaperone activities.FACT... 0.02 OrthoFinder output from all 47 species
Gb_23782 SPT16 component SPT16 of FACT histone chaperone complex 0.02 OrthoFinder output from all 47 species
Len_g04839 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Lfl_g12952 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
MA_10430230g0030 SPT16 component SPT16 of FACT histone chaperone complex 0.03 OrthoFinder output from all 47 species
Ore_g18292 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Ore_g30315 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.02 OrthoFinder output from all 47 species
Sam_g16028 No alias component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
Solyc10g006770.4.1 SPT16, Solyc10g006770 component SPT16 of FACT histone chaperone complex 0.02 OrthoFinder output from all 47 species
Spa_g25832 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e013464_P001 SPT16, Zm00001e013464 component SPT16 of FACT histone chaperone complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR013719 RTT106/SPT16-like_middle_dom 838 923
IPR000504 RRM_dom 1037 1104
IPR000504 RRM_dom 1211 1275
IPR000504 RRM_dom 1116 1179
IPR029148 FACT-Spt16_Nlobe 27 189
IPR013953 FACT_Spt16 559 710
IPR000994 Pept_M24 205 438
No external refs found!