Cre01.g009250


Description : 28.1 DNA.synthesis/chromatin structure Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. topoisomerase II (TOPII)


Gene families : OG_01_0004172 (Gene family) Phylogenetic Tree(s): OG0004172_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Cre01.g009250
Cluster HCCA cluster: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AT3G23890 TOPII, ATTOPII topoisomerase II 0.07 Gene family
Cpa|evm.model.tig00021432.55 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.05 Gene family
Cpa|evm.model.tig00021433.2 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.02 Gene family
GSVIVT01032138001 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.05 Gene family
LOC_Os02g47150 Os02g0699700 28.1 DNA.synthesis/chromatin structure Encodes a... 0.03 Gene family
MA_133272g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.08 Gene family
MA_6634g0010 No alias 28.1 DNA.synthesis/chromatin structure Encodes a... 0.07 Gene family
Smo127267 PACid_15411383 28.1 DNA.synthesis/chromatin structure Encodes a... 0.03 Gene family
Smo98330 PACid_15412854 28.1 DNA.synthesis/chromatin structure Encodes a... 0.03 Gene family
Solyc01g087500.3.1 Solyc01g087500.3 28.1 DNA.synthesis/chromatin structure Encodes a... 0.08 Gene family
Zm00001d017720 GRMZM2G021270 28.1 DNA.synthesis/chromatin structure Encodes a... 0.08 Gene family
Zm00001d051542 GRMZM2G121210 28.1 DNA.synthesis/chromatin structure Encodes a... 0.08 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
BP GO:0006265 DNA topological change IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013506 Topo_IIA_bsu_dom2 283 397
IPR003594 HATPase_C 91 237
IPR002205 Topo_IIA_A/C 710 1170
IPR006171 TOPRIM_domain 467 565
IPR031660 TOPRIM_C 581 707
No external refs found!