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  5. Adi_g059681

Adi_g059681 (PUB13, ATPUB13)


Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g059681

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00052670 PUB13, ATPUB13,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT5G01830 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Aob_g03476 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g01345 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000295 No alias not classified & original description: CDS=1-2304 0.03 OrthoFinder output from all 47 species
Cba_g64942 PUB12, AtPUB12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre03.g178550 No alias Dynein assembly factor with WDR repeat domains 1... 0.01 OrthoFinder output from all 47 species
Dde_g02665 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17103 PUB13, ATPUB13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016225001 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01020229001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
LOC_Os02g28720.1 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os12g38210.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Len_g14585 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
MA_103976g0010 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g07856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01986 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Smo231208 PUB13, ATPUB13 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g48731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001226_P001 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e014377_P001 ATPUB17, PUB17,... U-box domain-containing protein 4 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Zm00001e023475_P001 Zm00001e023475 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004408 holocytochrome-c synthase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 370 409
IPR000225 Armadillo 453 491
IPR003613 Ubox_domain 245 313
No external refs found!