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  5. Adi_g059193

Adi_g059193


Description : splicing factor *(RGH3) & original description: none


Gene families : OG0005058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g059193

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00102890 evm_27.TU.AmTr_v1... Zinc finger CCCH domain-containing protein 5... 0.02 OrthoFinder output from all 47 species
AT1G10320 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.05 OrthoFinder output from all 47 species
Dcu_g48291 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01023150001 No alias Zinc finger CCCH domain-containing protein 5... 0.02 OrthoFinder output from all 47 species
Solyc01g103090.4.1 Solyc01g103090 splicing factor (RGH3) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003989 acetyl-CoA carboxylase activity IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0009317 acetyl-CoA carboxylase complex IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
BP GO:0017182 peptidyl-diphthamide metabolic process IEP HCCA
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018202 peptidyl-histidine modification IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity IEP HCCA
BP GO:1900247 regulation of cytoplasmic translational elongation IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 202 222
IPR000571 Znf_CCCH 331 358
IPR000504 RRM_dom 265 321
No external refs found!