Solyc12g056820.2.1 (Solyc12g056820.2)


Aliases : Solyc12g056820.2

Description : 16.10 secondary metabolism.simple phenols Encodes a protein that is similar to laccase-like polyphenol oxidases. Involved in lignin and flavonoids biosynthesis. It has four conserved copper binding domains. Expressed in developing testa, where it colocalizes with the flavonoid end products proanthocyanidins and flavonols. Mutant plants exhibited a delay in developmentally determined browning of the testa, characterized by the pale brown color of seed coat. The tt10 mutant seeds accumulate more epicatechin monomers and more soluble proanthocyanidins than wild-type seeds. Flavonol composition was also affected in tt10 seeds, which exhibited a higher ratio of quercetin rhamnoside monomers versus dimers than wild-type seeds. TRANSPARENT TESTA 10 (TT10)


Gene families : OG_01_0000098 (Gene family) Phylogenetic Tree(s): OG0000098_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc12g056820.2.1
Cluster HCCA cluster: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
AT2G40370 LAC5 laccase 5 0.03 Gene family
AT5G01190 LAC10 laccase 10 0.04 Gene family
AT5G05390 LAC12 laccase 12 0.02 Gene family
GSVIVT01001604001 No alias 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
GSVIVT01001614001 No alias 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
GSVIVT01034040001 No alias 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
LOC_Os01g61160 Os01g0827300 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
LOC_Os03g18640 Os03g0297900 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
LOC_Os11g47390 Os11g0696900 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
MA_10427033g0010 No alias 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
MA_170004g0010 No alias 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
MA_21316g0010 No alias 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
MA_57140g0020 No alias 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
MA_897132g0010 No alias 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
Smo105894 PACid_15418074 No description available 0.02 Gene family
Smo404075 PACid_15407082 No description available 0.02 Gene family
Smo78404 PACid_15421352 No description available 0.02 Gene family
Zm00001d018064 GRMZM2G320786 16.10 secondary metabolism.simple phenols putative... 0.03 Gene family
Zm00001d049085 GRMZM2G309594 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family
Zm00001d052324 GRMZM2G388587 16.10 secondary metabolism.simple phenols putative... 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0055114 oxidation-reduction process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 27 140
IPR011706 Cu-oxidase_2 440 550
IPR001117 Cu-oxidase 154 305
No external refs found!