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  5. Adi_g058716

Adi_g058716


Description : scaffold nucleoporin of nuclear pore complex *(NUP107) & original description: none


Gene families : OG0005850 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005850_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g058716

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00267150 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.06 OrthoFinder output from all 47 species
AT3G14120 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.02 OrthoFinder output from all 47 species
Aev_g10068 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.03 OrthoFinder output from all 47 species
Ala_g13182 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.05 OrthoFinder output from all 47 species
Als_g03891 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.03 OrthoFinder output from all 47 species
Aob_g30214 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene49295.t1 Aspi01Gene49295 scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0200.g057533 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.02 OrthoFinder output from all 47 species
Cba_g01326 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.03 OrthoFinder output from all 47 species
Ceric.1Z298100.1 Ceric.1Z298100 not classified & original description: pacid=50565814... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001471.16 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre10.g425675 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g22743 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g10818 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.05 OrthoFinder output from all 47 species
Dde_g24769 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01016717001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
GSVIVT01016718001 No alias Nuclear pore complex protein NUP107 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os11g42420.1 LOC_Os11g42420 NUP107 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Len_g21186 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.03 OrthoFinder output from all 47 species
Lfl_g09527 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.06 OrthoFinder output from all 47 species
MA_10437074g0010 No alias Nuclear pore complex protein NUP107 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_3175g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g23360.1 No alias NUP107 scaffold nucleoporin of nuclear pore complex 0.01 OrthoFinder output from all 47 species
Ore_g16075 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.05 OrthoFinder output from all 47 species
Ppi_g32299 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.04 OrthoFinder output from all 47 species
Sam_g36573 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.03 OrthoFinder output from all 47 species
Smo182361 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Solyc12g049410.3.1 Solyc12g049410 NUP107 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Spa_g43417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11648 No alias scaffold nucleoporin of nuclear pore complex *(NUP107) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR007252 Nup84/Nup107 182 850
No external refs found!