1. Home
  2. Species
  3. Actinostachys digitata
  4. Sequence
  5. Adi_g055941

Adi_g055941


Description : component *(TWD40) of TPLATE AP-2 co-adaptor complex & original description: none


Gene families : OG0005180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005180_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g055941

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00213280 evm_27.TU.AmTr_v1... Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
AT5G24710 No alias Transducin/WD40 repeat-like superfamily protein 0.07 OrthoFinder output from all 47 species
Aev_g02602 No alias component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.03 OrthoFinder output from all 47 species
Ala_g04924 No alias component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene63835.t1 Aspi01Gene63835 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0002.g001553 No alias component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.08 OrthoFinder output from all 47 species
Ceric.33G065100.1 Ceric.33G065100 component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.05 OrthoFinder output from all 47 species
Cre12.g535350 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g06508 No alias component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.04 OrthoFinder output from all 47 species
Ehy_g07131 No alias component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01029823001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 OrthoFinder output from all 47 species
Gb_38178 No alias component TWD40 of TPLATE AP-2 co-adaptor complex 0.04 OrthoFinder output from all 47 species
LOC_Os01g46510.1 LOC_Os01g46510 component TWD40 of TPLATE AP-2 co-adaptor complex 0.02 OrthoFinder output from all 47 species
Len_g05473 No alias component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.06 OrthoFinder output from all 47 species
Lfl_g07125 No alias component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.05 OrthoFinder output from all 47 species
MA_10437103g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp2g04690.1 No alias component TWD40 of TPLATE AP-2 co-adaptor complex 0.04 OrthoFinder output from all 47 species
Ore_g37472 No alias component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.03 OrthoFinder output from all 47 species
Pir_g04477 No alias component *(TWD40) of TPLATE AP-2 co-adaptor complex &... 0.03 OrthoFinder output from all 47 species
Smo92496 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.05 OrthoFinder output from all 47 species
Solyc01g102510.4.1 Solyc01g102510 component TWD40 of TPLATE AP-2 co-adaptor complex 0.05 OrthoFinder output from all 47 species
Zm00001e020289_P001 Zm00001e020289 component TWD40 of TPLATE AP-2 co-adaptor complex 0.07 OrthoFinder output from all 47 species
Zm00001e027982_P002 Zm00001e027982 component TWD40 of TPLATE AP-2 co-adaptor complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 865 1114
IPR001680 WD40_repeat 205 242
IPR001680 WD40_repeat 9 39
No external refs found!