Solyc12g042080.2.1 (Solyc12g042080.2)

Aliases : Solyc12g042080.2

Description : 29.2.1.2.1.11 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S11 Encodes a putative ribosomal protein S11 (RPS11-beta). ribosomal protein S11-beta (RPS11-BETA)

Gene families : OG_01_0002752 (Gene family) Phylogenetic Tree(s): OG0002752_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): Solyc12g042080.2.1
Cluster	HCCA cluster: Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
AT3G48930	EMB1080	Nucleic acid-binding, OB-fold-like protein	0.33	Gene family
AT4G30800	No alias	Nucleic acid-binding, OB-fold-like protein	0.18	Gene family
AT5G23740	RPS11-BETA	ribosomal protein S11-beta	0.14	Gene family
Cpa\|evm.model.tig00000551.22	No alias	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.2	Gene family
Cre12.g514500	No alias	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.3	Gene family
GSVIVT01012877001	No alias	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.25	Gene family
GSVIVT01035927001	No alias	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.26	Gene family
LOC_Os04g52361	Os04g0613600	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.05	Gene family
LOC_Os08g10608	Os08g0207000	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.15	Gene family
MA_19350g0010	No alias	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.07	Gene family
Smo268639	PACid_15415730	No description available	0.18	Gene family
Solyc06g073790.3.1	Solyc06g073790.3	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.02	Gene family
Zm00001d002339	GRMZM2G044800	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.22	Gene family
Zm00001d026286	GRMZM2G019325	29.2.1.2.1.11 protein.synthesis.ribosomal...	0.21	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan
CC	GO:0005840	ribosome	IEA	InterProScan
BP	GO:0006412	translation	IEA	InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000266	Ribosomal_S17/S11	74	142
IPR032440	Ribosomal_S11_N	4	72

External Links

No external refs found!

Solyc12g042080.2.1 (Solyc12g042080.2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation