Solyc12g042077.1.1 (Solyc12g042077.1)


Aliases : Solyc12g042077.1

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation. auxin response factor 2 (ARF2)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc12g042077.1.1
Cluster HCCA cluster: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
AT1G35540 ARF14 auxin response factor 14 0.05 Gene family
AT5G20730 TIR5, MSG1,... Transcriptional factor B3 family protein /... 0.03 Gene family
GSVIVT01020805001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
GSVIVT01025691001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
GSVIVT01037136001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os04g57610 Os04g0671900 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
MA_10432349g0010 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Solyc01g103050.3.1 Solyc01g103050.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Solyc05g056040.3.1 Solyc05g056040.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d015243 GRMZM2G102845 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d023659 GRMZM2G006042 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
BP GO:0009725 response to hormone IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 128 229
IPR010525 Auxin_resp 254 336
No external refs found!