Solyc12g035870.2.1 (Solyc12g035870.2)


Aliases : Solyc12g035870.2

Description : 27.2 RNA.transcription Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. RNA polymerase subunit beta (RPOB)


Gene families : OG_01_0001906 (Gene family) Phylogenetic Tree(s): OG0001906_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc12g035870.2.1
Cluster HCCA cluster: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
ATCG00190 RPOB RNA polymerase subunit beta 0.05 Gene family
LOC_Os05g22860 No alias 27.2 RNA.transcription Chloroplast DNA-dependent RNA... 0.01 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan
BP GO:0006351 transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007641 RNA_pol_Rpb2_7 282 349
IPR007120 DNA-dir_RNAP_su2_dom 179 279
IPR007120 DNA-dir_RNAP_su2_dom 39 115
No external refs found!