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  5. AMTR_s00006p00254180

AMTR_s00006p00254180 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.176

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP)


Gene families : OG_01_0002772 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002772_tree ,
OG_02_0002615 (LandPlants) Phylogenetic Tree(s): OG_02_0002615_tree ,
OG_03_0003081 (SeedPlants) Phylogenetic Tree(s): OG_03_0003081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00254180
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT1G68990 MGP3 male gametophyte defective 3 0.03 Archaeplastida
AT5G15700 No alias DNA/RNA polymerases superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00021493.49 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 Archaeplastida
Gb_02899 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.04 Archaeplastida
LOC_Os09g07120.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.04 Archaeplastida
Mp3g02090.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.03 Archaeplastida
Pp3c12_4010V3.1 No alias DNA/RNA polymerases superfamily protein 0.04 Archaeplastida
Pp3c26_6450V3.1 No alias DNA/RNA polymerases superfamily protein 0.07 Archaeplastida
Solyc05g010660.4.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.09 Archaeplastida
Zm00001e035572_P001 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.05 Archaeplastida
Zm00001e037650_P001 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.02 Archaeplastida
AT1G68990 MGP3 male gametophyte defective 3 0.03 LandPlants
Gb_02899 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.03 LandPlants
LOC_Os09g07120.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.02 LandPlants
Mp3g02090.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.03 LandPlants
Pp3c12_4010V3.1 No alias DNA/RNA polymerases superfamily protein 0.04 LandPlants
Pp3c26_6450V3.1 No alias DNA/RNA polymerases superfamily protein 0.07 LandPlants
Solyc05g010660.4.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.09 LandPlants
Zm00001e035572_P001 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.04 LandPlants
AT1G68990 MGP3 male gametophyte defective 3 0.03 SeedPlants
Gb_02899 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.02 SeedPlants
LOC_Os09g07120.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.02 SeedPlants
Solyc05g010660.4.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.08 SeedPlants
Zm00001e035572_P001 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002092 DNA-dir_Rpol_phage-type 615 1006
No external refs found!