Adi_g042167


Description : component *(uS13c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0004147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004147_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g042167
Cluster HCCA: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
AT5G14320 No alias Ribosomal protein S13/S18 family 0.08 OrthoFinder output from all 47 species
Aev_g04341 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g00666 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aob_g00300 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g40481 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Azfi_s0065.g035921 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ceric.05G059300.1 Ceric.05G059300 component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cre12.g493950 No alias Protein biosynthesis.organelle translation... 0.05 OrthoFinder output from all 47 species
Dcu_g44492 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ehy_g00682 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01008933001 No alias Protein biosynthesis.organelle translation... 0.11 OrthoFinder output from all 47 species
Gb_24491 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.05 OrthoFinder output from all 47 species
LOC_Os03g49710.1 LOC_Os03g49710 component mtRPS13|psRPS13 of small ribosomal subunit... 0.07 OrthoFinder output from all 47 species
Len_g05067 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Lfl_g00631 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
MA_10431241g0010 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.04 OrthoFinder output from all 47 species
Mp1g18230.1 No alias component mtRPS13|psRPS13 of small ribosomal subunit... 0.06 OrthoFinder output from all 47 species
Nbi_g15772 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ore_g09656 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pir_g35705 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ppi_g02591 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014746 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sam_g47748 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Solyc05g005880.2.1 Solyc05g005880 component mtRPS13|psRPS13 of small ribosomal subunit... 0.03 OrthoFinder output from all 47 species
Spa_g00577 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Tin_g04300 No alias component *(uS13c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Zm00001e005396_P004 Zm00001e005396 component mtRPS13|psRPS13 of small ribosomal subunit... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0009916 alternative oxidase activity IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 56 164
No external refs found!