AMTR_s00160p00070370 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00160.24

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.LAV-ABI3 transcription factor


Gene families : OG_01_0001110 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001110_tree ,
OG_02_0000678 (LandPlants) Phylogenetic Tree(s): OG_02_0000678_tree ,
OG_03_0000807 (SeedPlants) Phylogenetic Tree(s): OG_03_0000807_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00160p00070370

Target Alias Description ECC score Gene Family Method Actions
Cre13.g562400 No alias B3 domain-containing transcription repressor VAL1... 0.01 Archaeplastida
Solyc06g083590.4.1 No alias transcription factor (LAV-ABI3) 0.03 Archaeplastida
Gb_01768 No alias transcription factor (LAV-ABI3) 0.01 LandPlants
LOC_Os01g68370.1 No alias transcription factor (LAV-ABI3) 0.01 LandPlants
Solyc06g083590.4.1 No alias transcription factor (LAV-ABI3) 0.03 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 244 338
No external refs found!