AMTR_s00159p00058480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00159.22

Description : Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana


Gene families : OG_01_0007624 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007624_tree ,
OG_02_0006946 (LandPlants) Phylogenetic Tree(s): OG_02_0006946_tree ,
OG_03_0006926 (SeedPlants) Phylogenetic Tree(s): OG_03_0006926_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00159p00058480
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AT2G41720 EMB2654 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
Gb_07283 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.03 Archaeplastida
LOC_Os07g11280.2 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.04 Archaeplastida
MA_10429061g0010 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.02 Archaeplastida
Pp3c2_1940V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Solyc04g015950.3.1 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.03 Archaeplastida
AT2G41720 EMB2654 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
Gb_07283 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.02 LandPlants
LOC_Os07g11280.2 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.04 LandPlants
Pp3c2_1940V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
Solyc04g015950.3.1 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.03 LandPlants
AT2G41720 EMB2654 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
Gb_07283 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.02 SeedPlants
LOC_Os07g11280.2 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.02 SeedPlants
Solyc04g015950.3.1 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 773 804
IPR002885 Pentatricopeptide_repeat 176 217
IPR002885 Pentatricopeptide_repeat 525 573
IPR002885 Pentatricopeptide_repeat 384 431
IPR002885 Pentatricopeptide_repeat 312 362
IPR002885 Pentatricopeptide_repeat 454 501
IPR002885 Pentatricopeptide_repeat 246 289
IPR002885 Pentatricopeptide_repeat 599 641
IPR002885 Pentatricopeptide_repeat 740 765
No external refs found!